Publications
2024
Kalytiak-Davis, Augustin Roman, and Jonathan Douglas Allen. “Settlement Preferences in Temperate Sea Stars.” The Biological Bulletin 246, no. 1 (February 2024): 41–51. .
McMahon, Teagan, Diana Thatcher, Branwen Williams, Alan Wanamaker, Brittany Jellison, Heidi Franklin, Katherine Guay, Nina M. Whitney, Joseph A. Stewart, and Michèle LaVigne. “Contrasting Responses of Commercially Important Northwest Atlantic Bivalve Species to Ocean Acidification and Temperature Conditions.” PLOS Climate 3, no. 11 (November 4, 2024): e0000509. .
2023
Richardson, Emily L., and Jonathan D. Allen. “Carryover Effects in a Sea Star: Juvenile Resource Availability Does Not Compensate for a Poor Larval Environment.” Marine Biology 170, no. 3 (January 24, 2023): 25. .
2021
French, Karina Inge Brocco, and Jonathan D. Allen. “Cannibalism of Newly Metamorphosed Juvenile Sea Stars.” Ecology 102, no. 8 (2021): 1–4. .
Schrage, Kharis R., Juselyn D. Tupik, and Jonathan D. Allen. “Intertidal Zonation of Hemichordates in Soft Sediments.” Invertebrate Biology 140, no. 3 (2021): e12344. .
2015
Allen, Jonathan D., Anne Frances Armstrong, and Shelby L. Ziegler. “Environmental Induction of Polyembryony in Echinoid Echinoderms.” The Biological Bulletin 229, no. 3 (December 2015): 221–31..
2014
Anderson, Lloyd. “An Assessment of PH and the Effects of Ocean Acidification in a Phippsburg, ME Clam Flat,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Bearman, Anna. “Characterization of Dissolved Organic Matter in Local Marine and Terrestrial Waters,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Berzins, Sabine. “Vulnerability of Eelgrass (Zostera Marina) to Green Crab (Carcinus Maenas) Invasion,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Hall, A., D. Lesser, A. Bourakovsky, C. Hamley, C. Adams, A. Westervelt, P. Camill, and C. E. Umbanhowar Jr. “Investigating the Effects of Climatic Change and Fire Dynamics on Peatland C Accumulation in Coastal Labrador, Canada” 2014 (December 1, 2014): GC11B-0557. .
Hartley, Tricia. “Does the Neuropeptide GYS Modulate Stretch Feedback Pathways in the Lobster Cardiac Neuromuscular System?," 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Hefner, Nora. “GIS Analysis of Historical Cod Fisheries in the Gulf of Maine,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Howard, Amanda. “Quantification and Characterization of AST-C Peptides in Homarus Americanus Using Mass Spectrometry,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Jane, Sophie. “The Effects of Nitric Oxide on the Modulation of the Cardiac System of the American Lobster, Homarus Americanus, via a Peptide (GYSDRNLRFamide),” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Kramer, Sasha. “The Relationship between Nitrate Concentration and Phytoplankton Blooms in Harpswell Sound,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Mitchell, Jack. “Long-Term Trends in Tropical Fish Larvae of the Hawaiian Islands Revealed by DNA Barcoding,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Moritz, Bailey. “Effects of Alkalinity and Ocean Acidification on Clam Shell Development in Phippsburg, ME,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Qu, Xuan. “Pyrokinin Peptides’ Effect on the Stomatogastric Nervous System in the American Lobster, Homarus Americanus,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Schwab, D. B., and J. D. Allen. “Size-Specific Maternal Effects in Response to Predator Cues in an Intertidal Snail.” Marine Ecology Progress Series 499 (March 3, 2014): 127–41. .
Short, Aidan W., and David B. Carlon. “A Molecular Analysis of Green Crab Diets in Casco Bay, Maine,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Walder, Christine. “Ecological Effects of Rockweed (Ascophyllum Nodosum) Harvesting,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
Watling, Jenna. “The Evolutionary Response of Populations of the Blue Mussel (Mytilus Edulis) Populations to Climate Change,” 2014, 91ÑÇÉ«´«Ã½ Digital Collections, 91ÑÇÉ«´«Ã½, Brunswick, ME. .
2013
Armer, Madison C., Wijitha U. Nilaweera, Trevor J. Rivers, Namrata M. Dasgupta, and Irina N. Beloozerova. “Effect of Light on the Activity of Motor Cortex Neurons during Locomotion.” Behavioural Brain Research 250 (August 1, 2013): 238–50. .
Armstrong, A. Frances, Holly N. Blackburn, and Jonathan D. Allen. “A Novel Report of Hatching Plasticity in the Phylum Echinodermata.” The American Naturalist 181, no. 2 (February 2013): 264–72. .
Blackburn, Holly. “Maternal Effects on Cloning Frequency, Larval Development, and Juvenile Size in the Seastar Asterias Forbesi,” 2013, William and Mary ScholarWorks, William and Mary College, Williamsburg, Virginia. .
Johnson, Amy S., Jordan M. Salyers, Nicholas J. Alcorn, Olaf Ellers, and Jonathan D. Allen. “Externally Visible Fluorochrome Marks and Allometries of Growing Sea Urchins.” Invertebrate Biology 132, no. 3 (2013): 251–69. .
Rivers, Trevor J., and James G. Morin. “Female Ostracods Respond to and Intercept Artificial Conspecific Male Luminescent Courtship Displays.” Behavioral Ecology 24, no. 4 (July 1, 2013): 877–87. .
2012
Allen, Jonathan D. “Effects of Egg Size Reductions on Development Time and Juvenile Size in Three Species of Echinoid Echinoderms: Implications for Life History Theory.” Journal of Experimental Marine Biology and Ecology 422–423 (July 1, 2012): 72–80. .
Rivers, Trevor L., and James G. Morin. “The Relative Cost of Using Luminescence for Sex and Defense: Light Budgets in Cypridinid Ostracods.” Journal of Experimental Biology 215, no. 16 (August 15, 2012): 2860–68. .
Schwab, Daniel. “Maternal Effects on Reproduction and Development in the Mud Snail, Ilyanassa Obsoleta,” 2012, William and Mary ScholarWorks, William and Mary College, Williamsburg, VA. .
2011
Hilário, Ana, María Capa, Thomas G. Dahlgren, Kenneth M. Halanych, Crispin T. S. Little, Daniel J. Thornhill, Caroline Verna, and Adrian G. Glover. “New Perspectives on the Ecology and Evolution of Siboglinid Tubeworms.” PLOS ONE 6, no. 2 (February 14, 2011): e16309. .
Kemp, Dustin W., Clinton A. Oakley, Daniel J. Thornhill, Laura A. Newcomb, Gregory W. Schmidt, and William K. Fitt. “Catastrophic Mortality on Inshore Coral Reefs of the Florida Keys Due to Severe Low-Temperature Stress.” Global Change Biology 17, no. 11 (2011): 3468–77. .
Roopin, Modi, Daniel J. Thornhill, Scott R. Santos, and Nanette E. Chadwick. “Ammonia Flux, Physiological Parameters, and Symbiodinium Diversity in the Anemonefish Symbiosis on Red Sea Coral Reefs.” Symbiosis 53, no. 2 (May 1, 2011): 63–74.
2010
Allen, Jonathan D., and Jan A. Pechenik. “Understanding the Effects of Low Salinity on Fertilization Success and Early Development in the Sand Dollar Echinarachnius Parma.” The Biological Bulletin 218, no. 2 (April 2010): 189–99. .
Mahon, Andrew R., Daniel J. Thornhill, Jon L. Norenburg, and Kenneth M. Halanych. “DNA Uncovers Antarctic Nemertean Biodiversity and Exposes a Decades-Old Cold Case of Asymmetric Inventory.” Polar Biology 33, no. 2 (February 1, 2010): 193–202. .
Thornhill, Daniel J., Katharine Doubleday, Dustin W. Kemp, and Scott R. Santos. “Host Hybridization Alters Specificity of Cnidarian–Dinoflagellate Associations.” Marine Ecology Progress Series 420 (December 16, 2010): 113–23. .
Thornhill, Daniel J., and Jenna B. Lord. “Secondary Structure Models for the Internal Transcribed Spacer (ITS) Region 1 from Symbiotic Dinoflagellates.” Protist 161, no. 3 (July 1, 2010): 434–51. .
Thornhill, D. J., D. W. Kemp, E. M. Sampayo, and G. W. Schmidt. “Comparative Analyses of Amplicon Migration Behavior in Differing Denaturing Gradient Gel Electrophoresis (DGGE) Systems.” Coral Reefs 29, no. 1 (March 1, 2010): 83–91. .
Vaughn, Dawn, and Jonathan D. Allen. “The Peril of the Plankton.” Integrative and Comparative Biology 50, no. 4 (October 1, 2010): 552–70. .
Whitlow, W. Lindsay “Changes in survivorship, behavior, and morphology in native soft-shell clams induced by invasive green crab predators.” Marine Ecology 31, no. 3 (2010): 418-430. .
2009
Alcorn, Nicholas J., and Jonathan D. Allen. “How Do Changes in Parental Investment Influence Development in Echinoid Echinoderms?” Evolution & Development 11, no. 6 (2009): 719–27. .
Correa, A. M. S., M. E. Brandt, T. B. Smith, D. J. Thornhill, and A. C. Baker. “Symbiodinium Associations with Diseased and Healthy Scleractinian Corals.” Coral Reefs 28, no. 2 (June 1, 2009): 437–48. .
Ellers, Olaf, and Amy S. Johnson. “Polyfluorochrome Marking Slows Growth Only during the Marking Month in the Green Sea Urchin Strongylocentrotus Droebachiensis.” Invertebrate Biology 128, no. 2 (2009): 126–44. .
Selden, Rebecca, Amy S. Johnson, and Olaf Ellers. “Waterborne Cues from Crabs Induce Thicker Skeletons, Smaller Gonads and Size-Specific Changes in Growth Rate in Sea Urchins.” Marine Biology 156, no. 5 (April 1, 2009): 1057–71. .
Simon, Carol A., Daniel J. Thornhill, Fernanda Oyarzun, and Kenneth M. Halanych. “Genetic Similarity between Boccardia Proboscidea from Western North America and Cultured Abalone, Haliotis Midae, in South Africa.” Aquaculture 294, no. 1 (September 1, 2009): 18–24. .
Thornhill, Daniel J., Thomas G. Dahlgren, and Kenneth M. Halanych. “Evolution and Ecology of Ophryotrocha (Dorvilleidae, Eunicida).” In Annelids in Modern Biology, 242–56. John Wiley & Sons, Ltd, 2009. .
Thornhill, Daniel J., Yu Xiang, William K. Fitt, and Scott R. Santos. “Reef Endemism, Host Specificity and Temporal Stability in Populations of Symbiotic Dinoflagellates from Two Ecologically Dominant Caribbean Corals.” PLOS ONE 4, no. 7 (July 15, 2009): e6262. .
2008
Allen, Jonathan D. “Effects of Egg Size Reductions on Development Time and Juvenile Size in Three Species of Echinoid Echinoderms: Implications for Life History Theory.” Journal of Experimental Marine Biology and Ecology 422–423 (July 1, 2012): 72–80. .
Pratt, Marney C. “Living Where the Flow Is Right: How Flow Affects Feeding in Bryozoans.” Integrative and Comparative Biology 48, no. 6 (December 1, 2008): 808–22. .
Thornhill, Daniel J., Kevin T. Fielman, Scott R. Santos, and Kenneth M. and Halanych. “Siboglinid-Bacteria Endosymbiosis: A Model System for Studying Symbiotic Mechanisms.” Communicative & Integrative Biology 1, no. 2 (October 1, 2008): 163–66. .
Thornhill, Daniel J., Dustin W. Kemp, Brigitte U. Bruns, William K. Fitt, and Gregory W. Schmidt. “Correspondence Between Cold Tolerance and Temperate Biogeography in a Western Atlantic Symbiodinium (Dinophyta) Lineage.” Journal of Phycology 44, no. 5 (2008): 1126–35. .
Thornhill, Daniel J., Andrew R. Mahon, Jon L. Norenburg, and Kenneth M. Halanych. “Open-Ocean Barriers to Dispersal: A Test Case with the Antarctic Polar Front and the Ribbon Worm Parborlasia Corrugatus (Nemertea: Lineidae).” Molecular Ecology 17, no. 23 (2008): 5104–17. .
2007
Allen, Jonathan D., and Bruno Pernet. “Intermediate Modes of Larval Development: Bridging the Gap between Planktotrophy and Lecithotrophy - Allen - 2007 - Evolution & Development - Wiley Online Library,” October 2007. .
Allen, Jonathan D., and Justin S. McAlister. “Testing Rates of Planktonic versus Benthic Predation in the Field.” Journal of Experimental Marine Biology and Ecology 347, no. 1 (August 24, 2007): 77–87. .
Allen, Jonathan D., and Robert D. Podolsky. “Uncommon Diversity in Developmental Mode and Larval Form in the Genus Macrophiothrix (Echinodermata: Ophiuroidea).” Marine Biology 151, no. 1 (March 1, 2007): 85–97. .
Moran, Amy L., and Jonathan D. Allen. “How Does Metabolic Rate Scale With Egg Size? An Experimental Test With Sea Urchin Embryos.” The Biological Bulletin 212, no. 2 (April 2007): 143–50. .
Pratt, Marney C., and Emily W. Grason. “Invasive Species as a New Food Source: Does a Nudibranch Predator Prefer Eating an Invasive Bryozoan?” Biological Invasions 9, no. 6 (August 1, 2007): 645–55. .
2006
Allen, Jonathan D., Christina Zakas, and Robert D. Podolsky. “Effects of Egg Size Reduction and Larval Feeding on Juvenile Quality for a Species with Facultative-Feeding Development.” Journal of Experimental Marine Biology and Ecology 331, no. 2 (April 18, 2006): 186–97. .
2005
Campbell, Robert G., Gregory J. Teegarden, Allan D. Cembella, and Edward G. Durbin. “Zooplankton Grazing Impacts on Alexandrium Spp. in the Nearshore Environment of the Gulf of Maine.” Deep Sea Research Part II: Topical Studies in Oceanography, The Ecology and Oceanography of Toxic Blooms in the Gulf of Maine, 52, no. 19 (September 1, 2005): 2817–33. .
Pratt, Marney C. “Consequences of Coloniality: Influence of Colony Form and Size on Feeding Success Inthe Bryozoan Membranipora Membranacea.” Marine Ecology Progress Series 303 (November 21, 2005): 153–65. .
2004
Butler, Michael, and Amy S. Johnson. “Are Melanized Feather Barbs Stronger?” Journal of Experimental Biology 207, no. 2 (January 15, 2004): 285–93. .
Lohrmann, Nissa L., Barry A. Logan, and Amy S. Johnson. “Seasonal Acclimatization of Antioxidants and Photosynthesis in Chondrus Crispus and Mastocarpus Stellatus, Two Co-Occurring Red Algae With Differing Stress Tolerances.” The Biological Bulletin 207, no. 3 (December 2004): 225–32. .
Pratt, Marney C. “Effect of Zooid Spacing on Bryozoan Feeding Success: Is Competition or Facilitation More Important?” Biological Bulletin 207, no. 1 (2004): 17–27. .
Pratt, Marney C. “Effect of Zooid Spacing on Bryozoan Feeding Success: Is Competition or Facilitation More Important?” The Biological Bulletin 207, no.1 (August 2004). .
2003
Baumgartner, Mark F., Tim V. N. Cole, Robert G. Campbell, Gregory J. Teegarden, and Edward G. Durbin. “Associations between North Atlantic Right Whales and Their Prey, Calanus Finmarchicus, over Diel and Tidal Time Scales.” Marine Ecology Progress Series 264 (December 15, 2003): 155–66. .
Teegarden, Gregory J., Allan D. Cembella, Carissa L. Capuano, Stacy H. Barron, and Edward G. Durbin. “Phycotoxin Accumulation in Zooplankton Feeding on Alexandrium Fundyense—Vector or Sink?” Journal of Plankton Research 25, no. 4 (April 1, 2003): 429–43. .
Whitlow, W. Lindsay, Neil A. Rice, and Christine Sweeney. “Native Species Vulnerability to Introduced Predators: Testing an Inducible Defense and a Refuge from Predation.” In Marine Bioinvasions: Patterns, Processes and Perspectives, edited by Judith Pederson, 23–31. Dordrecht: Springer Netherlands, 2003. .
2002
Johnson, Amy S., Olaf Ellers, Jim Lemire, Melissa Minor, and Holly A. Leddy. “Sutural Loosening and Skeletal Flexibility during Growth: Determination of Drop-like Shapes in Sea Urchins | Proceedings of the Royal Society of London. Series B: Biological Sciences,” 2002. .
Pratt, Marney C, and Amy S Johnson. “Strength, Drag, and Dislodgment of Two Competing Intertidal Algae from Two Wave Exposures and Four Seasons.” Journal of Experimental Marine Biology and Ecology 272, no. 1 (June 10, 2002): 71–101. .
2001
Campbell, Robert G., Melissa M. Wagner, Gregory J. Teegarden, Carla A. Boudreau, and Edward G. Durbin. “Growth and Development Rates of the Copepod Calanus Finmarchicus Reared in the Laboratory.” Marine Ecology Progress Series 221 (October 18, 2001): 161–83. .
Johnson, Amy S. “Drag, Drafting, and Mechanical Interactions in Canopies of the Red Alga Chondrus Crispus.” The Biological Bulletin 201, no. 2 (October 2001): 126–35. .
McCurdy, Dean G. “Asexual Reproduction in Pygospio Elegans Claparède (Annelida, Polychaeta) in Relation to Parasitism by Lepocreadium Setiferoides (Miller and Northup) (Platyhelminthes, Trematoda).” The Biological Bulletin 201, no. 1 (August 2001): 45–51. .
McCurdy, Dean G., J. Sherman Boates, and Mark R. Forbes. “An Empirical Model Of The Optimal Timing Of Reproduction For Female Amphipods Infected By Trematodes.” Journal of Parasitology 87, no. 1 (February 1, 2001): 24–30. .
Teegarden, Gregory J., Robert G. Campbell, and Edward G. Durbin. “Zooplankton Feeding Behavior and Particle Selection in Natural Plankton Assemblages Containing Toxic Alexandrium Spp.” Marine Ecology Progress Series 218 (August 20, 2001): 213–26. .
2000
Leddy, Ha, and As Johnson. “Walking versus Breathing: Mechanical Differentiation of Sea Urchin Podia Corresponds to Functional Specialization.” The Biological Bulletin 198, no. 1 (February 2000): 88–93. .
1998
Ellers, Olaf, A. S. Johnson, and P. E. Moberg. “Structural Strengthening of Urchin Skeletons by Collagenous Sutural Ligaments.” The Biological Bulletin 195, no. 2 (October 1998): 136–44. .